Core Modules#
The core modules provide fundamental utilities, constants, and enumerations used throughout the atomworks library.
- Common Utilities
- Constants
AA_LIKE_CHEM_TYPESAA_OR_NA_CHEM_COMP_TYPESAF3_EXCLUDED_LIGANDSAF3_EXCLUDED_LIGANDS_REGEXALLOW_BIOTITE_CCDALTLOC_DEFAULT_IDSATOMIC_NUMBER_TO_ELEMENTATOMWORKS_COMMON_ANNOTATIONSATOM_LEVEL_ANNOTATIONSBIOTITE_BOND_TYPE_TO_BOND_ORDERBIOTITE_COMMON_OPTIONAL_ANNOTATIONSBIOTITE_DEFAULT_ANNOTATIONSBOND_DISTANCE_THRESHOLD_CHNOBOND_DISTANCE_THRESHOLD_CHNOPSBOND_DISTANCE_THRESHOLD_OTHERCARBOHYDRATE_D_CHEM_TYPESCARBOHYDRATE_LIKE_CHEM_TYPESCARBOHYDRATE_L_CHEM_TYPESCCD_MIRROR_PATHCHAIN_LEVEL_ANNOTATIONSCHEM_COMP_TYPESCHEM_TYPE_POLYMERIZATION_ATOMSCHNOPS_ELEMENTSCHNO_ELEMENTSCRYSTALLIZATION_AIDSDEFAULT_ALTLOC_IDDEFAULT_B_FACTORDEFAULT_CCD_ANNOTATIONSDEFAULT_CHARGEDEFAULT_INS_CODEDEFAULT_OCCUPANCYDEFAULT_VALENCEDICT_THREE_TO_ONEDNA_BACKBONE_ATOM_NAMESDNA_LIKE_CHEM_TYPESDO_NOT_MATCH_CCDELEMENT_NAME_TO_ATOMIC_NUMBERGAPGAP_ONE_LETTERHYDROGEN_LIKE_SYMBOLSLIGAND_LIKE_CHEM_TYPESMASKEDMASK_LIKE_CHEM_TYPESMAX_CHEM_TYPE_LENGTHMETAL_ELEMENTSMOLECULE_LEVEL_ANNOTATIONSNA_LIKE_CHEM_TYPESNA_VALUESNUCLEIC_ACID_BACKBONE_ATOM_NAMESNUCLEIC_ACID_FRAME_ATOM_NAMESPDB_ISOTOPE_SYMBOL_TO_ELEMENT_SYMBOLPDB_MIRROR_PATHPEPTIDE_MAX_RESIDUESPN_UNIT_LEVEL_ANNOTATIONSPOLYPEPTIDE_D_CHEM_TYPESPOLYPEPTIDE_L_CHEM_TYPESPROTEIN_BACKBONE_ATOM_NAMESPROTEIN_FRAME_ATOM_NAMESRESIDUE_LEVEL_ANNOTATIONSRNA_BACKBONE_ATOM_NAMESRNA_LIKE_CHEM_TYPESSTANDARD_AASTANDARD_AA_ONE_LETTERSTANDARD_AA_TIP_ATOM_NAMESSTANDARD_AND_UNKNOWN_AASTANDARD_AND_UNKNOWN_DNASTANDARD_AND_UNKNOWN_POLYMER_RESIDUESSTANDARD_AND_UNKNOWN_RNASTANDARD_CIF_ANNOTATIONSSTANDARD_DNASTANDARD_DNA_ONE_LETTERSTANDARD_NASTANDARD_POLYMER_RESIDUESSTANDARD_PURINE_RESIDUESSTANDARD_PYRIMIDINE_RESIDUESSTANDARD_RNASTRUCT_CONN_BOND_ORDER_TO_INTSTRUCT_CONN_BOND_TYPESTRANSFORMATION_LEVEL_ANNOTATIONSUNKNOWN_AAUNKNOWN_ATOMUNKNOWN_ATOMIC_NUMBERUNKNOWN_ATOM_NAMEUNKNOWN_COORD_VALUEUNKNOWN_DNAUNKNOWN_ELEMENTUNKNOWN_LIGANDUNKNOWN_POLYMER_RESIDUESUNKNOWN_RNAWATER_LIKE_CCDS
- Enumerations