:orphan:

Examples
======================

This gallery contains example scripts demonstrating how to use atomworks for structure parsing, visualization, and analysis.

Each example is fully annotated and can be run interactively.

Enjoy exploring!


.. raw:: html

    <div class="sphx-glr-thumbnails">

.. thumbnail-parent-div-open

.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example demonstrates how to parse a monomer PDB file and plot the backbone trace using atomworks.io.">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_plot_monomer_thumb.svg
    :alt:

  :ref:`sphx_glr_auto_examples_plot_monomer.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">Plot a Monomer Structure</div>
    </div>


.. raw:: html

    <div class="sphx-glr-thumbcontainer" tooltip="This example demonstrates how to use the atomworks.io package to load, inspect, and manipulate mmCIF structure files. You&#x27;ll see how to parse a structure, visualize it, and perform basic analysis.">

.. only:: html

  .. image:: /auto_examples/images/thumb/sphx_glr_plot_basics_thumb.svg
    :alt:

  :ref:`sphx_glr_auto_examples_plot_basics.py`

.. raw:: html

      <div class="sphx-glr-thumbnail-title">CIFUtils: User Example</div>
    </div>


.. thumbnail-parent-div-close

.. raw:: html

    </div>


.. toctree::
   :hidden:

   /auto_examples/plot_monomer
   /auto_examples/plot_basics


.. only:: html

  .. container:: sphx-glr-footer sphx-glr-footer-gallery

    .. container:: sphx-glr-download sphx-glr-download-python

      :download:`Download all examples in Python source code: auto_examples_python.zip </auto_examples/auto_examples_python.zip>`

    .. container:: sphx-glr-download sphx-glr-download-jupyter

      :download:`Download all examples in Jupyter notebooks: auto_examples_jupyter.zip </auto_examples/auto_examples_jupyter.zip>`


.. only:: html

 .. rst-class:: sphx-glr-signature

    `Gallery generated by Sphinx-Gallery <https://sphinx-gallery.github.io>`_