All modules for which code is available

• atomworks.io.common
• atomworks.io.parser
• atomworks.io.tools.fasta
• atomworks.io.tools.inference
• atomworks.io.tools.rdkit
• atomworks.io.transforms.atom_array
• atomworks.io.transforms.categories
• atomworks.io.utils.assembly
• atomworks.io.utils.bonds
• atomworks.io.utils.ccd
• atomworks.io.utils.chain
• atomworks.io.utils.io_utils
• atomworks.io.utils.non_rcsb
• atomworks.io.utils.selection
• atomworks.io.utils.sequence
• atomworks.io.utils.testing
• atomworks.io.utils.visualize
• atomworks.ml.common
• atomworks.ml.datasets.parsers.base
• atomworks.ml.datasets.parsers.custom_metadata_row_parsers
• atomworks.ml.encoding_definitions
• atomworks.ml.pipelines.af3
• atomworks.ml.preprocessing.constants
• atomworks.ml.preprocessing.get_pn_unit_data_from_structure
• atomworks.ml.preprocessing.utils.clustering
• atomworks.ml.preprocessing.utils.fasta
• atomworks.ml.preprocessing.utils.structure_utils
• atomworks.ml.samplers
• atomworks.ml.transforms._checks
• atomworks.ml.transforms.af3_reference_molecule
• atomworks.ml.transforms.atom_array
• atomworks.ml.transforms.atom_frames
• atomworks.ml.transforms.atomize
• atomworks.ml.transforms.base
• atomworks.ml.transforms.bonds
• atomworks.ml.transforms.center_random_augmentation
• atomworks.ml.transforms.chirals
• atomworks.ml.transforms.covalent_modifications
• atomworks.ml.transforms.crop
• atomworks.ml.transforms.diffusion.batch_structures
• atomworks.ml.transforms.diffusion.edm
• atomworks.ml.transforms.dna.pad_dna
• atomworks.ml.transforms.encoding
• atomworks.ml.transforms.featurize_unresolved_residues
• atomworks.ml.transforms.filters
• atomworks.ml.transforms.masks
• atomworks.ml.transforms.rdkit_utils
• atomworks.ml.transforms.rf2aa_assumptions
• atomworks.ml.transforms.sasa
• atomworks.ml.transforms.symmetry
• atomworks.ml.transforms.template
• atomworks.ml.utils.debug
• atomworks.ml.utils.error
• atomworks.ml.utils.geometry
• atomworks.ml.utils.io
• atomworks.ml.utils.misc
• atomworks.ml.utils.nested_dict
• atomworks.ml.utils.numpy
• atomworks.ml.utils.rng
• atomworks.ml.utils.testing
• atomworks.ml.utils.timer
• atomworks.ml.utils.token